rs4287140 chr1:181430547 G>A
- Sequence
gtgcaagttcccatggagcccact[G/A]tgtacatgcccgaaaagaggagga
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) L1236 (Hodgkin lymphoma) GM02630 (Fanconi anemi) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- NFKB1_HUMAN HTF4_HUMAN CTCF_HUMAN EP300_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFKB1_HUMAN | -3.79 | 3.47 | 1.00 | n/a | No Hit | |||
| HTF4_HUMAN | -2.69 | 3.08 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.88 | 1.76 | 1.14 | n/a | No Hit | |||
| EP300_HUMAN | 0.23 | 2.99 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | -0.21 | 2.12 | 1.00 | n/a | n/a |
Items per page:
1 – 5 of 10