rs4297478 chr11:120565145 T>C
- Sequence
ctgcggagcccgcgtcatcctgcc[T/C]gtggggagcgctgtgcctgctctc
- ASB in cell types
- PANC1 (pancreatic ductal adenocarcinoma) GM12878 (female B-cells lymphoblastoid cell line) GM12891 (male B- cells lymphoblastoid cell line) RCC 7860 (Renal cell carcinoma)
- ASB for transcription factors
- CTCF_HUMAN FOXK2_HUMAN ZHX2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.40 | -0.01 | 1.45 | -0.45 | Weak Concordant | |||
| FOXK2_HUMAN | 3.25 | n/a | 1.00 | n/a | No Hit | |||
| ZHX2_HUMAN | 2.56 | -4.79 | 2.00 | n/a | n/a |
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Motif analysis
