rs430973 chr17:58631845 T>G
- Sequence
ctcaaaatatagtcttaatgtcca[T/G]ttatgtgccttccacatgcgaaag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) MCF7 WS8 cells MCF7L-P(immortalized breast epithelial cell line)
- ASB for transcription factors
- T2FA_HUMAN GATA3_HUMAN CTCF_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| T2FA_HUMAN | 0.83 | 1.01 | 3.25 | n/a | n/a | |||
| GATA3_HUMAN | -0.21 | 1.76 | 4.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.45 | 1.54 | 1.91 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.47 | 1.62 | 4.32 | n/a | No Hit | |||
| MBD4_HUMAN | 1.56 | 0.21 | 1.75 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, chronic kidney disease, college completion, mitral annular calcium, serum creatinine, systolic blood pressure (sbp), years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood