ADASTRA v6.1.0
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rs43133
chr8:89758441
A
>
T
Sequence
tagggagcacaggcttctctggag[A/T]tgcagcagttgcattcctccacac
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
CLOCK_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CLOCK_HUMAN
2.69
-2.43
8.2·10
-3
1.00
1.00
n/a
No Hit
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
hdl cholesterol
,
parkinsons disease
,
rheumatoid arthritis
,
triglycerides
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Tibial
,
Brain_Amygdala
,
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Brain_Frontal_Cortex_BA9
,
Breast_Mammary_Tissue
,
Cells_Cultured_fibroblasts
,
Colon_Transverse
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Lung
,
Muscle_Skeletal
,
Nerve_Tibial
,
Pancreas
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Small_Intestine_Terminal_Ileum
,
Spleen
,
Thyroid
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Generated by ADASTRA database
2024.11.16 v6.1.0 Mabel
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)