rs4324129 chr16:90032653 C>T
- Sequence
gtgtgctatgggtgaccaggtgtg[C/T]acaggtacggaaaggtgaggaggt
- ASB in cell types
- K562 (myelogenous leukemia) HT1080 (fibrosarcoma) keratinocytes IMR90 (lung fibroblasts)
- ASB for transcription factors
- SSRP1_HUMAN ZEB2_HUMAN SNAI2_HUMAN MTA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SSRP1_HUMAN | 2.06 | -0.29 | 1.50 | n/a | n/a | |||
| ZEB2_HUMAN | 1.76 | n/a | 2.50 | n/a | No Hit | |||
| SNAI2_HUMAN | 3.17 | -5.17 | 1.50 | n/a | No Hit | |||
| MTA1_HUMAN | 2.64 | n/a | 2.00 | n/a | n/a | |||
| HIRA_HUMAN | 1.74 | 0.59 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Frontal_Cortex_BA9, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood