rs4330341 chr4:153207796 G>T
- Sequence
gaaaagggagtccctcagggtcac[G/T]gttttctatctgtcctgaggcatg
- ASB in cell types
- GM12892 (female B-cells lymphoblastoid cell line) HuCCT1 (intrahepatic cholangiocarcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| GM12892 (female B-cells lymphoblastoid cell line) | 1.58 | -0.65 | 1.17 | |||
| HuCCT1 (intrahepatic cholangiocarcinoma) | -0.38 | 2.20 | 2.00 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum