rs4331987 chr6:55011232 T>C
- Sequence
cttccaaggctcttcttcttggcc[T/C]acaggtggcccccttctcactgtg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) GM02610 (Lymphoblastoid Cell Lines) GM02630 (Fanconi anemi) GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN GATA3_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.55 | -1.05 | 1.12 | -0.51 | Weak Concordant | |||
| GATA3_HUMAN | 2.77 | -2.43 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | 1.94 | n/a | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Esophagus_Mucosa, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis