rs4334415 chr19:12985471 A>G

Sequence
tgcagggacatgcggactgagtat[A/G]tcagtgtgcctctgctggccagtg
ASB in cell types
brain prefrontal cortex region tissues HCT-116 (colon carcinoma) HEK293 (embryonic kidney)
ASB for transcription factors
OLIG2_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
OLIG2_HUMAN 0.47 2.29 1.001.2·10-3 1.00 n/a No Hit
CTCF_HUMAN 0.43 1.14 1.003.3·10-3 1.39 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP birth weight,  ldl cholesterol,  mitral annular calcium,  obesity with early age of onset (age >2),  serum creatinine,  total cholesterol,  triglycerides change with statins,  waist hip ratio
GTEx eQTL Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis

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