rs4337546 chr20:30377177 G>A
- Sequence
cgccccgccccccccccccctccc[G/A]gcagaaacctggaagtggaaatct
- ASB in cell types
- HCT-116 (colon carcinoma) GM19240 (B cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- RAD21_HUMAN CTCF_HUMAN ZFX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 2.45 | -1.35 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.86 | 0.66 | 1.72 | -3.44 | Concordant | |||
| ZFX_HUMAN | 2.14 | -0.72 | 1.00 | n/a | No Hit |
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Motif analysis
