rs4340287 chr15:85500506 A>G

Sequence
tcgtgaagtcagcccactgaatct[A/G]taattcagaaatctataaatagct
ASB in cell types
LN95(Prostate adenocarcinoma)
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
LN95(Prostate adenocarcinoma) 1.98 n/a 0.031.00 3.00
Items per page:
1 – 1 of 1

Motif analysis

No data available

Genetic associations

GRASP bipolar disorder,  chronic kidney disease,  hdl cholesterol,  height,  serum creatinine
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Brain_Frontal_Cortex_BA9,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

Download