rs4340980 chr6:166259080 T>C
- Sequence
acataaacttctgtggctgtcctc[T/C]gcccagtttgcggtcacatgtcgc
- ASB in cell types
- K562 (myelogenous leukemia) Th1-cells CD14+ monocytes
- ASB for transcription factors
- TBX21_HUMAN STAT1_HUMAN KDM1A_HUMAN REQU_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | -4.15 | 2.43 | 1.50 | n/a | No Hit | |||
| STAT1_HUMAN | 1.70 | -3.78 | 2.00 | n/a | No Hit | |||
| KDM1A_HUMAN | -1.68 | 2.16 | 1.17 | n/a | n/a | |||
| REQU_HUMAN | -0.40 | 2.59 | 1.00 | n/a | n/a | |||
| ENL_HUMAN | n/a | 2.59 | 1.00 | n/a | n/a |
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Motif analysis
