rs4341609 chr12:19694854 T>C
- Sequence
taagagtaagacaaggccaaatga[T/C]gtaataccacagagcagttgagaa
- ASB in cell types
- HepG2 (hepatoblastoma) ARP-1(Plasma cell myeloma) SU-DHL-1 (Anaplastic large cell lymphoma)
- ASB for transcription factors
- ATF7_HUMAN IKZF1_HUMAN CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF7_HUMAN | -4.37 | 4.25 | 1.00 | 1.21 | Weak Concordant | |||
| IKZF1_HUMAN | 2.47 | n/a | 2.00 | n/a | n/a | |||
| CEBPB_HUMAN | 0.17 | 1.16 | 1.33 | 3.16 | Concordant |
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Motif analysis
