rs4344527 chr11:118102796 A>G

Sequence
cagactccgggttcctcctctttt[A/G]ccagtacatactgagcgagcactg
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
EGR1_HUMAN MTG16_HUMAN NCOA2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EGR1_HUMAN n/a 2.86 1.001.1·10-5 2.00 n/a No Hit
MTG16_HUMAN n/a 1.83 1.007.0·10-4 2.00 n/a n/a
NCOA2_HUMAN -1.50 2.56 1.000.02 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Nerve_Tibial,  Pituitary,  Small_Intestine_Terminal_Ileum,  Thyroid

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