rs4353845 chr3:177448172 T>C
- Sequence
agaaaagcctggcaaagagcccac[T/C]gttgttcttaggcaggcctcctcc
- ASB in cell types
- BEAS-2B (bronchial epithelium) foreskin keratinocyte MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- GCR_HUMAN CTCF_HUMAN NFIB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -0.33 | 1.64 | 1.09 | n/a | No Hit | |||
| CTCF_HUMAN | 0.09 | 1.75 | 1.83 | -2.34 | Discordant | |||
| NFIB_HUMAN | -0.19 | 2.37 | 1.25 | -0.17 | Weak Discordant |
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Motif analysis
