rs4353954 chr4:138242485 T>A
- Sequence
ccagcattactcagctcttttttt[T/A]aaaaaaagaaaaaaacaggaggag
- ASB in cell types
- K562 (myelogenous leukemia) monocytes from periferal blood CD14+ monocytes 22RV1 (prostate carcinoma)
- ASB for transcription factors
- SRBP2_HUMAN ANDR_HUMAN SMRC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRBP2_HUMAN | 1.79 | n/a | 2.50 | n/a | No Hit | |||
| ANDR_HUMAN | 2.33 | -4.79 | 2.00 | 0.85 | Weak Discordant | |||
| SMRC1_HUMAN | 1.30 | -0.16 | 1.00 | n/a | n/a |
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Motif analysis
