rs4364224 chr4:168919816 T>C

Sequence
gctgagagtacagatctagttaca[T/C]tgtgacctgctggtggtgaccttc
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) liver
ASB for transcription factors
HNF4A_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HNF4A_HUMAN -0.76 2.11 1.003.8·10-3 1.00 n/a No Hit
ESR1_HUMAN -0.04 1.01 1.004.7·10-3 2.00 1.03 Weak Concordant
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Motif analysis

ESR1_HUMAN Weak Concordant
ESR1_HUMAN pic

Genetic associations

GRASP ldl cholesterol,  rheumatoid arthritis,  variant creutzfeldt-jakob disease
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cerebellum,  Colon_Sigmoid,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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