rs4365150 chr13:20492841 T>C
- Sequence
ttgctcctgccaggcacttggggg[T/C]gctaccaaccaaggaaccaatctg
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line) GM19238 (female B-cells lymphoblastoid cell lines) HMEC (human mammary epithelial cells)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -1.14 | 2.01 | 1.83 | 3.46 | Concordant | |||
| STAG1_HUMAN | -0.16 | 1.76 | 1.83 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal