rs4366770 chr17:57126830 T>C
- Sequence
acacactaggccggggtttgtcaa[T/C]aaagttttattggaacaggcatga
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN FOXA3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.31 | 1.78 | 1.58 | 1.22 | Weak Concordant | |||
| FOXA3_HUMAN | n/a | 3.18 | 2.00 | 1.26 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Esophagus_Mucosa, Heart_Atrial_Appendage, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Thyroid