rs4372894 chr2:227406818 A>G

Sequence
tctgagccagtccaaaccagcagt[A/G]tctacatcatcttttcttgttctg
ASB in cell types
HCASMC (Human coronary artery smooth muscle cells)
ASB for transcription factors
TCF21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TCF21_HUMAN 2.57 n/a 6.0·10-41.00 3.00 0.21 Weak Discordant
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Motif analysis

TCF21_HUMAN Weak Discordant
TCF21_HUMAN pic

Genetic associations

GRASP 2 hour glucose,  childhood acute lymphoblastic leukemia,  hdl cholesterol change with statins,  salmonella-induced pyroptosis
GTEx eQTL Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Pancreas,  Testis

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