rs4373369 chr6:100297359 G>A
- Sequence
atggtgagaatgaatctctgcact[G/A]tcacatcattaatcaaaacaatac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- FOXA1_HUMAN GCR_HUMAN FOS_HUMAN CTBP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.39 | 0.38 | 1.47 | n/a | No Hit | |||
| GCR_HUMAN | 1.41 | 0.51 | 1.00 | n/a | No Hit | |||
| FOS_HUMAN | 1.83 | -0.69 | 1.17 | 0.50 | Weak Discordant | |||
| CTBP1_HUMAN | 2.35 | -2.04 | 1.00 | n/a | n/a |
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Motif analysis
