rs4379388 chr7:95608792 C>T
- Sequence
gtgttggaaggaagaagcagctgg[C/T]ctgcggaagctaagcagatgctgg
- ASB in cell types
- 22RV1 (prostate carcinoma) CD14+ monocytes breast tumor liver
- ASB for transcription factors
- STAT1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 1.76 | 0.03 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.20 | -4.66 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP height, neuroblastoma (brain cancer), paternal transmission distortion, transmission distortion
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid