rs4385415 chr7:75739785 A>G
- Sequence
ggacctgcctcccaaacctcatca[A/G]aggaacccgtcagagcttatttgt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) BEAS-2B (bronchial epithelium) SEM (childhood B acute lymphoblastic leukemia) naive IgD+ B cells
- ASB for transcription factors
- FOXK2_HUMAN GCR_HUMAN RUNX2_HUMAN FOXP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 3.01 | -3.10 | 1.00 | n/a | No Hit | |||
| GCR_HUMAN | 0.25 | 1.44 | 1.00 | n/a | No Hit | |||
| RUNX2_HUMAN | 2.29 | -1.96 | 1.00 | -1.49 | Weak Concordant | |||
| FOXP1_HUMAN | 0.31 | 2.78 | 2.00 | n/a | No Hit | |||
| EGR1_HUMAN | 0.48 | 2.19 | 1.00 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
Genetic associations
GRASP body mass index (bmi), microalbuminuria, total cholesterol change with statins, urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood