rs4388245 chr5:160199509 G>A
- Sequence
ccccgggccgtgccgtgccaagcc[G/A]gccaccagagggcgcgccaggtcg
- ASB in cell types
- neutrophils from periferal blood CD14+ monocytes K562 (myelogenous leukemia) thoracic aorta
- ASB for transcription factors
- STAT1_HUMAN RAD21_HUMAN TEAD3_HUMAN CTCFL_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.34 | -0.77 | 1.67 | n/a | No Hit | |||
| RAD21_HUMAN | 1.61 | 0.47 | 1.33 | n/a | n/a | |||
| TEAD3_HUMAN | -2.11 | 2.60 | 1.00 | n/a | No Hit | |||
| CTCFL_HUMAN | 2.67 | n/a | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.28 | -1.54 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Brain_Hypothalamus, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg