rs4388466 chr8:47203389 C>T
- Sequence
gggcacactgggaatccacagagc[C/T]gtgtctggggtgggctctctaacc
- ASB in cell types
- THP-1 (acute monocytic leukemia) GM12890 (Lymphoblastoid Cell Lines) TF-1 (erythroleukemia) esophagus squamous epithelium
- ASB for transcription factors
- GATA2_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA2_HUMAN | -0.17 | 2.23 | 1.00 | n/a | No Hit | |||
| RAD21_HUMAN | -0.12 | 1.01 | 1.89 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP college completion, infant head circumference, red blood cell count (rbc), serum creatinine, waist hip ratio, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid