rs4393146 chr1:41653095 A>G

Sequence
aactaacatgcagaaataagtttt[A/G]agtcactgtttattcactttaatt
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF2_HUMAN IKZF1_HUMAN MEF2B_HUMAN TBX21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF2_HUMAN -2.24 2.64 1.002.1·10-5 1.00 n/a n/a
IKZF1_HUMAN -3.08 2.61 1.005.1·10-5 1.25 n/a n/a
MEF2B_HUMAN -2.24 2.60 1.007.8·10-3 1.00 n/a No Hit
TBX21_HUMAN -2.24 2.36 1.000.02 1.00 n/a No Hit
MTA2_HUMAN -4.52 2.63 1.000.02 1.50 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  total cholesterol,  urinary albumin-to-creatinine ratio
GTEx eQTL Esophagus_Mucosa,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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