rs4395839 chr7:84824360 C>T

Sequence
gctggatttggcctgtttcaccta[C/T]gaccttgctgtatgctcattaaac
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
NR2C1_HUMAN COT1_HUMAN KDM1A_HUMAN HDAC1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NR2C1_HUMAN n/a 2.85 1.001.6·10-7 1.75 6.13 Concordant
COT1_HUMAN n/a 2.42 1.001.5·10-5 1.50 7.31 Concordant
KDM1A_HUMAN 0.33 2.10 1.001.7·10-5 1.00 n/a n/a
HDAC1_HUMAN -0.77 2.70 1.007.9·10-5 1.00 n/a n/a
HDAC2_HUMAN -1.31 1.88 1.006.7·10-3 1.00 n/a n/a
Items per page:
1 – 5 of 6

Motif analysis

NR2C1_HUMAN Concordant
NR2C1_HUMAN pic

Genetic associations

GRASP 2 hour glucose,  ldl cholesterol,  obesity with early age of onset (age >2),  rheumatoid arthritis,  total cholesterol
GTEx eQTL Testis

Download