rs4400498 chr9:136410555 C>T
- Sequence
gcgcctccgagcctctcgccgctg[C/T]ttccgctccgagcaccgaaagcgc
- ASB in cell types
- HCT-116 (colon carcinoma) CD14+ monocytes upper lobe of left lung CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- MAX_HUMAN STAT1_HUMAN EP300_HUMAN FLI1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MAX_HUMAN | 2.00 | -0.77 | 1.07 | n/a | No Hit | |||
| STAT1_HUMAN | 3.55 | n/a | 2.00 | n/a | No Hit | |||
| EP300_HUMAN | 2.59 | 0.43 | 1.31 | n/a | n/a | |||
| FLI1_HUMAN | -1.42 | 1.88 | 1.00 | -0.64 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood