rs4407214 chr2:28895392 T>G
- Sequence
gtacttgcttccggaccttccccc[T/G]cctgccccccctttgggtgccggc
- ASB in cell types
- 22RV1 (prostate carcinoma) HepG2 (hepatoblastoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN ETV5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.23 | -0.25 | 2.00 | n/a | No Hit | |||
| ETV5_HUMAN | -4.65 | 2.55 | 2.00 | -2.52 | Discordant |
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Motif analysis
Genetic associations
GRASP body mass index (bmi), college completion, fasting insulin, homa-ir, triglycerides, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood