rs4411539 chr17:51734657 G>T
- Sequence
actgccatctgggggcagggaagg[G/T]caccacctggaggccaggaatggg
- ASB in cell types
- HT1080 (fibrosarcoma) neural progenitors GM12892 (female B-cells lymphoblastoid cell line) WA01 (H1, human embryonic stem cells)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.54 | -0.05 | 1.60 | -2.89 | Concordant | |||
| RAD21_HUMAN | 2.24 | -0.27 | 1.75 | n/a | n/a | |||
| STAG1_HUMAN | 3.33 | -3.67 | 1.00 | n/a | n/a |
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Motif analysis
