rs4412304 chr7:77122226 G>A
- Sequence
cctcaagtcaaataggagacgtaa[G/A]tcagggtttgctgaaacaagagcg
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- COT1_HUMAN MNT_HUMAN NRF1_HUMAN SIN3A_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | 3.79 | -3.59 | 1.00 | n/a | No Hit | |||
| MNT_HUMAN | 2.23 | -0.71 | 1.38 | n/a | No Hit | |||
| NRF1_HUMAN | 2.24 | -1.70 | 1.00 | n/a | No Hit | |||
| SIN3A_HUMAN | 2.51 | n/a | 1.50 | n/a | n/a | |||
| MYBB_HUMAN | 2.90 | -2.56 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood