rs4412790 chr12:29253828 G>C
- Sequence
ctttacatttagcaaggatgttta[G/C]acattcattggctacgcttaacat
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN TLE3_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -1.68 | 3.05 | 1.50 | 6.18 | Concordant | |||
| TLE3_HUMAN | -4.34 | 2.51 | 1.50 | n/a | n/a | |||
| ANDR_HUMAN | -0.51 | 1.98 | 1.50 | 2.83 | Concordant |
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Motif analysis
Genetic associations
GRASP height, microalbuminuria, refractive error, urinary albumin-to-creatinine ratio, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Brain_Caudate_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood