rs4413319 chr3:109072009 C>T
- Sequence
taacccttttctctcacatgccta[C/T]ttttagaagttcctgtttatttgt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) OCI-LY7 (diffuse large B-cell lymphoma)
- ASB for transcription factors
- SRF_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRF_HUMAN | -2.88 | 3.29 | 1.00 | 4.06 | Concordant | |||
| IKZF2_HUMAN | -1.85 | 2.15 | 1.00 | n/a | n/a |
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Motif analysis
