rs4418446 chr9:136410572 G>A
- Sequence
gccgctgcttccgctccgagcacc[G/A]aaagcgcgtgcctgaacgccttgg
- ASB in cell types
- HCT-116 (colon carcinoma) upper lobe of left lung CTV-1 (Adult T acute lymphoblastic leukemia) OCI-LY7 (diffuse large B-cell lymphoma)
- ASB for transcription factors
- MAX_HUMAN FLI1_HUMAN MED26_HUMAN FOXP1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MAX_HUMAN | 1.71 | -0.93 | 1.12 | n/a | No Hit | |||
| FLI1_HUMAN | -1.43 | 2.06 | 1.00 | -3.95 | Discordant | |||
| MED26_HUMAN | 1.89 | -1.09 | 1.00 | n/a | n/a | |||
| FOXP1_HUMAN | 2.42 | -2.26 | 1.00 | n/a | No Hit | |||
| EP300_HUMAN | 1.66 | 0.69 | 1.29 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood