rs4420487 chr15:85825917 A>G
- Sequence
atggattttgtgaatgcagccact[A/G]tttattgatgtaatcgctccaccc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7 WS8 cells breast tumor
- ASB for transcription factors
- PKNX1_HUMAN FOXA1_HUMAN ZN217_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | -3.00 | 2.12 | 1.50 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.15 | 1.15 | 1.65 | 1.24 | Weak Concordant | |||
| ZN217_HUMAN | -0.96 | 1.53 | 1.00 | n/a | n/a |
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Motif analysis
