rs4420679 chr2:186130133 C>A

Sequence
aaacagctaaagctcaaatctttc[C/A]ctggccatggctagtagtttcaag
ASB in cell types
Ishikawa (endometrial adenocarcinoma) LNCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 1.20 0.07 6.8·10-91.00 1.91 n/a No Hit
ANDR_HUMAN 1.03 0.07 0.021.00 2.03 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  diabetic retinopathy in type 2 diabetes mellitus
GTEx eQTL Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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