rs4420930 chr4:144400085 C>T
- Sequence
catcccttgaatcagacatcatta[C/T]ttgctttggacaatagaaagcagc
- ASB in cell types
- TTC-1240 (Rhabdoid tumor of the kidney) BEAS-2B (bronchial epithelium) A549 (lung carcinoma)
- ASB for transcription factors
- SMCA4_HUMAN GCR_HUMAN SMRC1_HUMAN MAFK_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMCA4_HUMAN | -3.08 | 2.96 | 1.00 | n/a | n/a | |||
| GCR_HUMAN | -0.55 | 1.56 | 1.50 | n/a | No Hit | |||
| SMRC1_HUMAN | n/a | 2.59 | 1.00 | n/a | n/a | |||
| MAFK_HUMAN | -1.66 | 2.04 | 1.00 | 0.68 | Weak Concordant |
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Motif analysis
