rs4422155 chr2:86195896 C>T
- Sequence
gcctttgtttcgtttgacagccct[C/T]cagggagtcatagtgattgctgga
- ASB in cell types
- MDA-MB-231 (breast adenocarcinoma) HEK293 (embryonic kidney) HepG2 (hepatoblastoma) A549 (lung carcinoma)
- ASB for transcription factors
- BRD4_HUMAN BRD2_HUMAN GABPA_HUMAN JUN_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 2.36 | 0.03 | 1.80 | n/a | n/a | |||
| BRD2_HUMAN | 1.86 | -0.01 | 2.06 | n/a | n/a | |||
| GABPA_HUMAN | 2.47 | -1.36 | 2.00 | n/a | No Hit | |||
| JUN_HUMAN | 1.19 | 0.04 | 1.33 | n/a | No Hit | |||
| ZEB2_HUMAN | 2.71 | -2.78 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, advanced age-related macular degeneration, advanced age-related macular degeneration (geographic atrophy), fasting insulin, hdl cholesterol, homa-ir, parkinsons disease (pd)
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood