rs4430950 chr2:240991890 C>T
- Sequence
aatgtcctgcaaggccagccacca[C/T]atccccacgcccagcggctgtgag
- ASB in cell types
- HASM2 (Human airway smooth muscle 2) 22RV1 (prostate carcinoma) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- ANDR_HUMAN GCR_HUMAN TCF21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.19 | 0.04 | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | 1.68 | -0.20 | 1.07 | n/a | No Hit | |||
| TCF21_HUMAN | 1.33 | n/a | 3.00 | 4.03 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Whole_Blood