rs4432296 chr17:41966789 C>T
- Sequence
tatgtaaagcggccgggctcgggt[C/T]gtgccaccgctggactcccgtgtc
- ASB in cell types
- CD14+ monocytes HeLa (cervical adenocarcinoma) BEAS-2B (bronchial epithelium) K562 (myelogenous leukemia)
- ASB for transcription factors
- STAT1_HUMAN GCR_HUMAN INT11_HUMAN REST_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | n/a | 2.95 | 3.00 | n/a | No Hit | |||
| GCR_HUMAN | 0.67 | 1.71 | 1.07 | n/a | No Hit | |||
| INT11_HUMAN | n/a | 1.04 | 3.00 | n/a | n/a | |||
| REST_HUMAN | -0.20 | 1.71 | 2.75 | n/a | No Hit | |||
| STAG1_HUMAN | 0.07 | 1.59 | 1.00 | n/a | n/a |
Items per page:
1 – 5 of 7
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood