rs4439887 chr19:6126787 A>G
- Sequence
ataggtgttgttgggtgcaatttt[A/G]tggggtatgcaaagcaggtgggct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM18486 (Lymphoblastoid Cell Lines) GM17942 (lymphoblastoid cell)
- ASB for transcription factors
- STAG1_HUMAN PKNX1_HUMAN CTCF_HUMAN SRF_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 0.10 | 1.70 | 1.08 | n/a | n/a | |||
| PKNX1_HUMAN | -1.73 | 2.12 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.38 | 1.13 | 1.31 | n/a | No Hit | |||
| SRF_HUMAN | -1.63 | 2.19 | 1.00 | n/a | No Hit |
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