rs4442928 chr19:54232359 C>T

Sequence
cttgctccatggccacgacactca[C/T]gggcccctccagcacgcactgggg
ASB in cell types
HepG2 (hepatoblastoma) HCASMC (Human coronary artery smooth muscle cells)
ASB for transcription factors
CREB1_HUMAN JUND_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CREB1_HUMAN 3.21 -2.88 8.9·10-61.00 1.00 n/a No Hit
JUND_HUMAN -3.76 2.37 1.000.04 1.33 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP homa-b
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Whole_Blood

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