rs4455299 chr3:57170417 G>C
- Sequence
aacaagtctttctagatcaaagcc[G/C]ccagggcaggtgggagtactctgc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM12891 (male B- cells lymphoblastoid cell line) SEM (childhood B acute lymphoblastic leukemia) GM19239 (male B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN ERG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.92 | 0.48 | 1.15 | n/a | No Hit | |||
| STAG1_HUMAN | 0.72 | -0.48 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 0.96 | -0.19 | 1.33 | n/a | n/a | |||
| ERG_HUMAN | 2.33 | -4.06 | 1.50 | n/a | No Hit | |||
| SMCA5_HUMAN | 2.87 | -2.67 | 1.00 | n/a | n/a |
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