rs4456089 chr1:113541922 C>T
- Sequence
gttcctctaaccactgtgttcttc[C/T]ccagctcaagtaagtgctgtcgca
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- SPI1_HUMAN SMCA4_HUMAN ETS1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.13 | -0.18 | 1.40 | 1.20 | Weak Discordant | |||
| SMCA4_HUMAN | 2.08 | -1.61 | 1.00 | n/a | n/a | |||
| ETS1_HUMAN | 2.05 | -1.51 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP adiponectin levels, advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, cervical cancer, maternal transmission distortion, panic disorder, rheumatoid arthritis, total cholesterol change with statins, transmission distortion, triglycerides change with statins, type 1 diabetes, rheumatoid arthritis, combined case analysis
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid