rs4457416 chr9:87466123 A>G

Sequence
aaaccagtttgcatggtgctaaaa[A/G]aagtttaacacctggctgccctaa
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant)
ASB for transcription factors
ESR1_HUMAN GRHL2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 1.09 -0.02 1.9·10-71.00 1.72 n/a No Hit
GRHL2_HUMAN 1.84 0.22 3.9·10-31.00 1.94 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol change with statins,  ldl cholesterol change with statins,  total cholesterol change with statins,  years of education
GTEx eQTL Muscle_Skeletal,  Pancreas,  Stomach,  Whole_Blood

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