rs4457551 chr1:20172171 G>A

Sequence
gctcacgaaagactactgtcccgt[G/A]cctccaaatgtgcctgctgtctag
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 1.93 -5.75 0.041.00 2.25 0.07 Weak Discordant
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Motif analysis

ANDR_HUMAN Weak Discordant
ANDR_HUMAN pic

Genetic associations

GRASP refractive error
GTEx eQTL Brain_Amygdala,  Brain_Caudate_basal_ganglia,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Nerve_Tibial,  Pituitary,  Stomach,  Uterus,  Whole_Blood

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