rs4457792 chr12:55716002 G>C

Sequence
ttccccgccaagatcttcacccaa[G/C]gtctcaagagggcggttcccaacc
ASB in cell types
adult erythroblasts GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
HCFC1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HCFC1_HUMAN 2.42 n/a 1.7·10-41.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP cystatin c in serum,  obesity with early age of onset (age >2),  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Transverse,  Esophagus_Mucosa,  Lung,  Muscle_Skeletal,  Prostate,  Testis,  Whole_Blood

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