rs4462216 chr1:203674456 A>G
- Sequence
tggctttcccaaggctctgggcct[A/G]agggactgccctttctcatcttga
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) GM12890 (Lymphoblastoid Cell Lines) GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- ESR1_HUMAN CTCF_HUMAN REQU_HUMAN SSXT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.99 | 0.14 | 1.89 | n/a | No Hit | |||
| CTCF_HUMAN | 1.65 | 0.60 | 1.21 | n/a | No Hit | |||
| REQU_HUMAN | 1.88 | -4.94 | 2.67 | n/a | n/a | |||
| SSXT_HUMAN | 2.51 | -2.35 | 1.00 | n/a | n/a |
Items per page:
1 – 4 of 4