rs4469422 chr8:93916851 T>A

Sequence
ggccgcagccctctccgcctcccc[T/A]cccactcgtcactgcgcagccaat
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
CREB1_HUMAN RBM25_HUMAN ZN398_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CREB1_HUMAN 0.81 -0.71 5.9·10-41.00 1.50 n/a No Hit
RBM25_HUMAN -0.19 1.15 1.008.2·10-3 1.50 n/a n/a
ZN398_HUMAN 2.45 -2.12 0.021.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  systolic blood pressure (sbp),  total cholesterol
GTEx eQTL Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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