rs45465203 chr13:48038078 G>A
- Sequence
gcgacgtaggatcgcgcccaggag[G/A]gggcgctgtgctgggtcaggcgag
- ASB in cell types
- 22RV1 (prostate carcinoma) CD34+ hematopoietic stem cells foreskin keratinocyte CD14+ monocytes
- ASB for transcription factors
- ANDR_HUMAN STAT1_HUMAN TIF1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.58 | -0.09 | 1.75 | n/a | No Hit | |||
| STAT1_HUMAN | 1.62 | n/a | 3.00 | n/a | No Hit | |||
| TIF1B_HUMAN | 3.21 | 0.77 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Pancreas, Testis, Thyroid