rs45500792 chr19:41397794 T>G
- Sequence
aggcagccccgaatctagcctacg[T/G]gagtgccggaccgctgagtggttg
- ASB in cell types
- K562 (myelogenous leukemia) breast tumor adult erythroblasts iPS-derived cells during chondrocyte differentiation
- ASB for transcription factors
- ESR1_HUMAN HCFC1_HUMAN RBM25_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.39 | -0.10 | 2.00 | n/a | No Hit | |||
| HCFC1_HUMAN | 2.16 | 0.34 | 2.00 | n/a | n/a | |||
| RBM25_HUMAN | 0.31 | 2.25 | 5.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood